C260A Intro Bioinformatics http://c260a.bioinformatics.ucla.edu Bioinformatics Course Homepage Wed, 18 Nov 2009 16:56:15 +0000 http://wordpress.org/?v=2.6 en HW5 available http://c260a.bioinformatics.ucla.edu/2009/11/18/hw5-available/ http://c260a.bioinformatics.ucla.edu/2009/11/18/hw5-available/#comments Wed, 18 Nov 2009 10:10:03 +0000 leec http://c260a.bioinformatics.ucla.edu/?p=369 Homework 5 has been pushed to git and is available here as a pdf.

]]> http://c260a.bioinformatics.ucla.edu/2009/11/18/hw5-available/feed/ Lecture 15 online http://c260a.bioinformatics.ucla.edu/2009/11/17/lecture-15-online/ http://c260a.bioinformatics.ucla.edu/2009/11/17/lecture-15-online/#comments Tue, 17 Nov 2009 22:01:18 +0000 leec http://c260a.bioinformatics.ucla.edu/?p=367 Lecture 15 is available in separate parts for the first hour and second hour.  The overlap alignment pseudocode has been pushed to git.

]]> http://c260a.bioinformatics.ucla.edu/2009/11/17/lecture-15-online/feed/ Lecture 14 video online http://c260a.bioinformatics.ucla.edu/2009/11/12/lecture-14-video-online/ http://c260a.bioinformatics.ucla.edu/2009/11/12/lecture-14-video-online/#comments Thu, 12 Nov 2009 23:15:39 +0000 leec http://c260a.bioinformatics.ucla.edu/?p=365 This time, the video is split into the first hour, and the second hour for your convenience.  The pseudocode has been pushed to git.

]]> http://c260a.bioinformatics.ucla.edu/2009/11/12/lecture-14-video-online/feed/ Alignment Lecture notes http://c260a.bioinformatics.ucla.edu/2009/11/12/alignment-lecture-notes/ http://c260a.bioinformatics.ucla.edu/2009/11/12/alignment-lecture-notes/#comments Thu, 12 Nov 2009 10:00:12 +0000 leec http://c260a.bioinformatics.ucla.edu/?p=363 This lecture we have two handouts: one HMM-based, the other dynamic-programming based.

]]> http://c260a.bioinformatics.ucla.edu/2009/11/12/alignment-lecture-notes/feed/ Graduate Student Projects http://c260a.bioinformatics.ucla.edu/2009/11/10/graduate-student-projects/ http://c260a.bioinformatics.ucla.edu/2009/11/10/graduate-student-projects/#comments Tue, 10 Nov 2009 21:49:14 +0000 nils http://c260a.bioinformatics.ucla.edu/?p=360 Here is a running list of possible projects for the graduate student final project (click here).

]]> http://c260a.bioinformatics.ucla.edu/2009/11/10/graduate-student-projects/feed/ Project 2 now available http://c260a.bioinformatics.ucla.edu/2009/11/10/project-2-now-available/ http://c260a.bioinformatics.ucla.edu/2009/11/10/project-2-now-available/#comments Tue, 10 Nov 2009 21:47:42 +0000 nils http://c260a.bioinformatics.ucla.edu/?p=354 Project 2 is now available on git or by click here (pdf and data).

]]> http://c260a.bioinformatics.ucla.edu/2009/11/10/project-2-now-available/feed/ Past Years Midterms available http://c260a.bioinformatics.ucla.edu/2009/11/05/past-years-server-down/ http://c260a.bioinformatics.ucla.edu/2009/11/05/past-years-server-down/#comments Fri, 06 Nov 2009 04:12:06 +0000 leec http://c260a.bioinformatics.ucla.edu/?p=350 UPDATE: You can access past years’ midterms now.

It looks like the web server containing past years’ exams was down.  I asked them to reboot it; it is back online.

]]> http://c260a.bioinformatics.ucla.edu/2009/11/05/past-years-server-down/feed/ Lecture 13 video online http://c260a.bioinformatics.ucla.edu/2009/11/05/lecture-13-video-online/ http://c260a.bioinformatics.ucla.edu/2009/11/05/lecture-13-video-online/#comments Fri, 06 Nov 2009 04:10:30 +0000 leec http://c260a.bioinformatics.ucla.edu/?p=348 Lecture 13 video online here.  Well, Screenflick did screw up again.  But fortunately I had a separate audio recording from my iPod Touch.  So I had to use iMovie HD to re-join the audio and the video, properly trimmed… grrr, way too much work.

]]> http://c260a.bioinformatics.ucla.edu/2009/11/05/lecture-13-video-online/feed/ Midterm Review Session http://c260a.bioinformatics.ucla.edu/2009/11/05/midterm-review-session/ http://c260a.bioinformatics.ucla.edu/2009/11/05/midterm-review-session/#comments Fri, 06 Nov 2009 03:29:23 +0000 nils http://c260a.bioinformatics.ucla.edu/?p=346 The midterm review session will be held in Franz 1260 from 12:00-1:50pm on Friday November 6 2009.

]]> http://c260a.bioinformatics.ucla.edu/2009/11/05/midterm-review-session/feed/ Midterm topics list posted http://c260a.bioinformatics.ucla.edu/2009/11/05/midterm-topics-list-posted/ http://c260a.bioinformatics.ucla.edu/2009/11/05/midterm-topics-list-posted/#comments Thu, 05 Nov 2009 09:49:52 +0000 leec http://c260a.bioinformatics.ucla.edu/?p=344 You can view the topic list here.

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